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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
152
total RNA-seq
100
single cell RNA-seq
75
ATAC-seq
25
DNase-seq
4
Hi-C
2
small RNA-seq
Assay category
254
Transcription
194
DNA binding
100
DNA accessibility
4
3D chromatin structure
Target of assay
180
histone
180
histone modification
95
broad histone mark
85
narrow histone mark
9
control
8
RNA binding protein
8
transcription factor
Date released
171
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
47
June, 2019
August, 2017
43
April, 2018
22
July, 2019
9
November, 2017
8
October, 2019
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
Available data
552
bigWig
531
bam
351
fastq
270
tsv
249
bed narrowPeak
153
zippedFastqFolder
88
tagAlign
77
bigBed narrowPeak
35
bed bed3+
31
bed broadPeak
31
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
552
Homo sapiens
Biosample type
1594
tissue
552
primary cell
522
cell line
207
in vitro differentiated cells
2
stem cell
Organ
214
epithelium
163
pancreas
32
connective tissue
29
vasculature
28
kidney
24
blood vessel
20
brain
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
362
AMP
180
T1D
10
HPAP
Genome assembly (visualization)
535
hg19
465
GRCh38
Lab
327
AMP-T2D consortium
215
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
38
inconsistent ontology term
Audit category:
32
missing controlled_by
assembly!
hg18
month_released!
August, 2017
organ_slims!
vein
BIOSAMPLE
ASSAY
552 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
primary cell
monocyte
84
53
2
CD8-positive, alpha-beta T cell
33
4
2
pancreatic alpha cell
10
12
12
pancreatic beta cell
10
12
9
pancreatic ductal cell
13
4
10
4
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