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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
113
ATAC-seq
1
DNase-seq
Assay category
127
Transcription
114
DNA accessibility
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
96
bam
95
bigWig
76
fastq
61
tsv
2
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
241
Homo sapiens
Biosample type
292
tissue
241
primary cell
16
in vitro differentiated cells
13
cell line
Organ
37
epithelium
37
pancreas
6
connective tissue
Project
120
AMP
76
HPAP
45
T1D
Genome assembly (visualization)
96
hg19
51
GRCh38
Lab
120
AMP-T2D consortium
76
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
assembly!
hg18
BIOSAMPLE
ASSAY
241 results
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total RNA-seq
ATAC-seq
DNase-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
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