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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
81
total RNA-seq
27
ATAC-seq
16
pCHi-C
1
DNAme array
1
single cell RNA-seq
Assay category
158
DNA binding
82
Transcription
27
DNA accessibility
1
DNA methylation
Target of assay
153
histone
153
histone modification
85
broad histone mark
68
narrow histone mark
4
control
1
RNA binding protein
1
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
247
bigWig
226
bam
177
bed narrowPeak
84
tagAlign
78
tsv
73
fastq
18
bigBed narrowPeak
2
bed bed3+
1
csv
Organism
284
Homo sapiens
Biosample type
284
primary cell
155
tissue
132
in vitro differentiated cells
21
cell line
Organ
72
pancreas
66
epithelium
5
kidney
1
bone element
1
bone marrow
1
connective tissue
Project
151
T1D
133
AMP
Genome assembly (visualization)
260
hg19
225
GRCh38
Lab
186
Kyle Gaulton, UCSD
98
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
32
missing controlled_by
assembly!
hg18
BIOSAMPLE
ASSAY
284 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNAme array
single cell RNA-seq
primary cell
monocyte
85
52
13
1
1
CD8-positive, alpha-beta T cell
33
2
1
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
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