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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
259
ATAC-seq
63
single cell RNA-seq
47
total RNA-seq
27
WGBS
27
snATAC-seq
16
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
2
DNase-seq
1
RNA microarray
Assay category
907
DNA binding
292
DNA accessibility
110
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
230
October, 2019
195
August, 2017
115
May, 2019
87
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
73
August, 2021
59
May, 2022
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2024
30
July, 2019
23
October, 2017
21
November, 2019
19
April, 2020
17
November, 2018
15
May, 2023
12
March, 2020
9
February, 2021
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1907
bam
1772
bigWig
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
bigBed broadPeak
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1364
Homo sapiens
Biosample type
1373
tissue
769
primary cell
483
cell line
255
in vitro differentiated cells
5
stem cell
Organ
218
pancreas
215
brain
204
liver
175
heart
162
kidney
114
blood vessel
114
vasculature
88
connective tissue
87
adipose tissue
79
limb
65
artery
48
eye
42
musculature of body
36
nerve
23
spleen
19
lung
12
bone element
12
epithelium
12
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1276
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
766
GRCh38
676
hg19
Lab
1085
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
1
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assembly!
hg18
files.file_type!
bigBed broadPeak
tsv
txt
BIOSAMPLE
ASSAY
1373 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
WGBS
snATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
DNase-seq
RNA microarray
tissue
liver
145
20
1
20
3
1
1
islet of Langerhans
71
67
25
7
3
1
4
1
4
1
kidney
27
75
51
6
1
1
1
heart left ventricle
35
2
4
1
1
body of pancreas
35
4
2
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