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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
215
ATAC-seq
174
single cell RNA-seq
133
total RNA-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
16
Hi-C
11
RRBS
7
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
307
Transcription
244
DNA accessibility
238
DNA binding
18
DNA methylation
16
3D chromatin structure
Target of assay
163
control
76
histone
76
histone modification
46
narrow histone mark
30
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
228
August, 2021
101
February, 2021
94
February, 2023
82
October, 2019
66
August, 2017
47
September, 2023
46
May, 2022
28
March, 2020
25
November, 2017
23
February, 2020
23
May, 2020
22
May, 2019
20
November, 2019
19
April, 2020
15
April, 2019
14
July, 2019
14
May, 2023
12
December, 2017
11
October, 2018
9
October, 2017
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
December, 2019
3
November, 2018
2
May, 2021
1
August, 2022
1
January, 2019
Available data
1467
bam
bigWig
971
bed narrowPeak
677
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
938
Homo sapiens
Biosample type
940
tissue
475
primary cell
140
cell line
134
in vitro differentiated cells
7
stem cell
Organ
208
kidney
156
heart
132
pancreas
100
bone element
96
liver
66
connective tissue
adipose tissue
63
blood vessel
63
brain
63
vasculature
53
eye
46
artery
31
limb
25
musculature of body
20
lung
16
skeleton
15
epithelium
12
nerve
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
845
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
145
GRCh38
105
hg19
Lab
649
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assembly!
hg18
files.file_type!
bigWig
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
940 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
75
64
49
6
1
1
islet of Langerhans
42
65
32
7
4
3
1
4
liver
63
1
20
1
1
1
3
bone element
84
coronary artery
2
35
1
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