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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1019
total RNA-seq
825
ChIP-seq
231
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
27
WGBS
24
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1215
Transcription
825
DNA binding
431
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
568
histone modification
567
histone
301
narrow histone mark
266
broad histone mark
173
control
88
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
47
September, 2023
46
December, 2017
42
May, 2022
40
March, 2020
40
May, 2024
40
November, 2019
38
May, 2021
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1802
bam
1705
bigWig
1076
tsv
899
bed narrowPeak
495
bigBed narrowPeak
351
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
151
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2634
Homo sapiens
Biosample type
2643
tissue
848
primary cell
627
cell line
340
in vitro differentiated cells
9
stem cell
Organ
547
connective tissue
488
adipose tissue
454
pancreas
359
liver
276
kidney
265
brain
256
heart
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2573
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1793
GRCh38
1670
hg19
Lab
2343
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
25
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assembly!
hg18
lab.title!
Kyle Gaulton, UCSD
month_released!
April, 2019
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
2643 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
281
71
39
6
1
4
1
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
143
20
1
2
3
1
1
1
1
kidney
49
4
75
64
13
6
1
1
1
bone element
84
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