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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1026
total RNA-seq
777
ChIP-seq
259
ATAC-seq
179
single cell RNA-seq
146
DNase-seq
86
RNA microarray
26
WGBS
26
snATAC-seq
24
pCHi-C
15
small RNA-seq
10
Hi-C
7
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1220
Transcription
777
DNA binding
435
DNA accessibility
33
DNA methylation
10
3D chromatin structure
Target of assay
597
histone modification
596
histone
313
narrow histone mark
283
broad histone mark
182
control
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
242
October, 2019
228
August, 2017
228
August, 2021
193
May, 2020
131
June, 2019
120
July, 2018
104
May, 2019
95
February, 2023
82
November, 2017
74
April, 2019
70
July, 2019
64
May, 2022
59
October, 2018
47
September, 2023
40
May, 2021
40
November, 2019
35
March, 2020
35
May, 2024
23
February, 2020
23
October, 2017
19
November, 2018
18
April, 2020
17
December, 2017
15
May, 2023
8
January, 2021
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1767
bam
1616
bigWig
1069
tsv
852
bed narrowPeak
452
bigBed narrowPeak
289
fastq
216
tagAlign
162
bed broadPeak
159
bed bed3+
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2592
Homo sapiens
Biosample type
2592
tissue
1064
primary cell
341
in vitro differentiated cells
297
cell line
7
stem cell
Organ
529
connective tissue
481
pancreas
470
adipose tissue
322
liver
301
heart
298
kidney
265
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
musculature of body
72
artery
56
eye
43
nerve
19
lung
19
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2496
AMP
47
KPMP
31
T1D
18
LungMap
Genome assembly (visualization)
1718
GRCh38
1600
hg19
Lab
2246
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
18
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
8
audit script error
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
assembly!
hg18
organ_slims!
musculature of body
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
2592 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
64
68
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
108
20
1
2
3
1
1
1
1
kidney
49
26
75
64
13
6
1
1
1
bone element
84
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