Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
total RNA-seq
12
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
12
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
control
1
broad histone mark
1
histone
1
histone modification
Date released
660
February, 2021
314
May, 2020
257
August, 2017
243
May, 2021
210
August, 2021
135
July, 2018
111
October, 2019
100
February, 2023
91
November, 2017
88
July, 2019
82
May, 2022
56
March, 2020
47
September, 2023
40
September, 2020
29
October, 2018
25
February, 2020
23
February, 2018
22
May, 2019
20
November, 2019
19
April, 2020
19
December, 2017
16
April, 2018
16
January, 2021
15
April, 2019
15
May, 2023
15
November, 2018
11
October, 2017
9
January, 2019
8
November, 2020
6
June, 2019
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
December, 2019
3
January, 2018
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
123
tsv
bed narrowPeak
64
xls
57
txt
45
bam
44
bigWig
20
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
209
Homo sapiens
Biosample type
165
tissue
28
cell line
17
in vitro differentiated cells
Organ
92
heart
66
kidney
18
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
epithelium
2
artery
1
adipose tissue
Project
210
AMP
Genome assembly (visualization)
19
hg19
15
GRCh38
Lab
122
AMP-T2D consortium
64
Katalin Susztak, Upenn
22
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assembly!
hg18
files.file_type!
bed narrowPeak
organ_slims!
epithelium
BIOSAMPLE
ASSAY
210 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
4
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
8
adipocyte
1
osteoblast
1
See all biosamples
Download