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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
6
Hi-C
5
RRBS
5
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
29
DNA binding
8
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
26
August, 2017
10
July, 2019
June, 2019
7
May, 2019
5
March, 2020
2
May, 2022
1
February, 2020
1
January, 2018
Available data
27
bigWig
19
bed narrowPeak
15
tagAlign
14
bam
13
bed broadPeak
8
tsv
6
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
txt
Organism
52
Homo sapiens
Biosample type
49
tissue
3
primary cell
Organ
939
pancreas
728
liver
663
connective tissue
496
epithelium
489
adipose tissue
heart
273
kidney
248
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
41
nerve
36
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
32
hg19
12
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
1
audit script error
assembly!
hg18
files.file_type!
bigBed broadPeak
month_released!
June, 2019
organ_slims!
heart
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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