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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
DNase-seq
23
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
34
DNA accessibility
23
DNA binding
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
177
histone
histone modification
113
narrow histone mark
64
broad histone mark
26
control
Date released
30
June, 2019
18
July, 2019
February, 2020
12
November, 2017
9
October, 2019
3
May, 2019
2
March, 2020
1
February, 2023
1
October, 2017
Available data
77
bam
56
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
19
tagAlign
14
tsv
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
76
Homo sapiens
Biosample type
64
tissue
12
primary cell
Organ
529
connective tissue
423
pancreas
414
adipose tissue
324
kidney
293
heart
267
liver
225
epithelium
159
bone element
158
vasculature
155
blood vessel
119
artery
76
brain
70
limb
59
musculature of body
57
eye
20
lung
18
nerve
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
76
AMP
Genome assembly (visualization)
43
GRCh38
39
hg19
Lab
76
AMP-T2D consortium
assembly!
hg18
files.file_type!
fastq
month_released!
February, 2020
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
76 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
12
1
1
1
1
frontal cortex
2
1
1
1
cerebellum (Hemisphere)
1
2
1
temporal lobe
2
1
1
caudate nucleus
1
2
+ See 24 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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