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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ATAC-seq
49
total RNA-seq
25
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
2
Capture-C
1
Hi-C
1
RNA microarray
Assay category
80
DNA accessibility
57
Transcription
25
DNA binding
1
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
8
control
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
186
February, 2023
166
August, 2021
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
7
August, 2020
5
March, 2023
4
July, 2018
4
October, 2022
3
January, 2018
3
March, 2019
1
August, 2018
1
August, 2022
1
December, 2019
Available data
tsv
90
bed narrowPeak
64
xls
57
txt
49
bam
31
bigWig
24
tagAlign
3
bed bed3+
1
hic
Organism
165
Homo sapiens
Biosample type
129
tissue
31
in vitro differentiated cells
4
primary cell
2
cell line
Organ
128
kidney
6
epithelium
4
liver
2
pancreas
1
adipose tissue
1
connective tissue
Project
166
AMP
Genome assembly (visualization)
90
GRCh38
26
hg19
Lab
128
Katalin Susztak, Upenn
38
AMP-T2D consortium
Bing Ren, UCSD
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
assembly!
hg18
files.file_type!
tsv
lab.title!
Bing Ren, UCSD
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
166 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
64
49
8
6
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
21
primary cell
hepatocyte
4
cell line
EndoC_BH1
2
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