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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
2
ATAC-seq
1
DNase-seq
Assay category
113
DNA binding
3
DNA accessibility
Target of assay
64
histone
64
histone modification
49
transcription factor
36
broad histone mark
28
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
70
November, 2017
39
August, 2017
4
October, 2017
2
October, 2019
1
March, 2019
Available data
2799
bam
2594
bigWig
1742
bed narrowPeak
1252
fastq
1122
tsv
1014
bigBed narrowPeak
376
tagAlign
312
bed broadPeak
276
bigBed broadPeak
bed bed3+
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
110
Homo sapiens
Biosample type
58
cell line
36
tissue
22
primary cell
Organ
58
liver
15
brain
14
pancreas
13
musculature of body
6
epithelium
6
vasculature
4
blood vessel
connective tissue
2
vein
1
adipose tissue
Project
116
AMP
Genome assembly (visualization)
115
hg19
77
GRCh38
Lab
114
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
assembly!
hg18
files.file_type!
bed bed3+
txt
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
116 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
58
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
cingulate gyrus
2
+ See 3 more…
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
See all biosamples
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