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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
15
DNase-seq
2
ATAC-seq
Assay category
108
DNA binding
17
DNA accessibility
Target of assay
61
histone
61
histone modification
47
transcription factor
34
broad histone mark
27
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
June, 2019
66
November, 2017
41
August, 2017
9
November, 2018
4
October, 2017
3
October, 2019
1
March, 2019
1
November, 2020
Available data
2996
bam
2799
bigWig
1532
tsv
1481
bed narrowPeak
1340
fastq
756
bigBed narrowPeak
392
tagAlign
161
txt
153
zippedFastqFolder
125
bed broadPeak
88
bigBed broadPeak
80
bed bed3+
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
119
Homo sapiens
Biosample type
59
cell line
48
tissue
17
primary cell
1
in vitro differentiated cells
Organ
61
liver
17
brain
17
pancreas
13
musculature of body
vasculature
8
blood vessel
8
epithelium
4
connective tissue
4
limb
4
vein
2
adipose tissue
2
artery
2
nerve
1
spleen
Project
125
AMP
Genome assembly (visualization)
124
hg19
87
GRCh38
Lab
123
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
assembly!
hg18
month_released!
August, 2020
June, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
125 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
58
Panc1
1
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
2
body of pancreas
2
+ See 10 more…
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
osteoblast
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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