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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
49
ChIP-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
89
Transcription
49
DNA binding
10
DNA accessibility
2
DNA methylation
Target of assay
123
histone modification
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
1
control
Date released
551
February, 2021
259
November, 2017
233
May, 2020
191
June, 2019
187
May, 2021
164
July, 2018
150
August, 2017
85
July, 2019
80
November, 2018
49
April, 2018
42
December, 2017
40
September, 2018
38
October, 2019
30
December, 2018
28
August, 2021
21
November, 2019
20
May, 2022
19
January, 2019
March, 2020
17
October, 2018
15
February, 2018
8
October, 2017
7
August, 2020
5
April, 2019
5
December, 2019
5
May, 2019
5
May, 2024
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
January, 2018
3
June, 2018
3
September, 2020
Available data
185
fastq
180
bam
150
bigWig
89
tsv
35
bed narrowPeak
21
bed bed3+
12
bigBed narrowPeak
11
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
4
bed broadPeak
4
bigBed broadPeak
Organism
150
Homo sapiens
Biosample type
119
tissue
23
in vitro differentiated cells
8
primary cell
Organ
101
pancreas
38
connective tissue
15
adipose tissue
6
liver
3
epithelium
Project
150
AMP
Genome assembly (visualization)
148
hg19
145
GRCh38
Lab
150
AMP-T2D consortium
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
assembly!
hg18
month_released!
March, 2020
target.investigated_as!
histone
BIOSAMPLE
ASSAY
150 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
89
7
1
1
white adipose tissue
12
liver
5
adipose tissue
2
right lobe of liver
1
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in vitro differentiated cells
adipocyte
22
1
primary cell
skeletal muscle myoblast
3
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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