Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
1
ChIP-seq
Assay category
60
DNA accessibility
52
Transcription
41
DNA methylation
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
134
May, 2022
19
September, 2020
1
October, 2019
Available data
3290
bam
3079
bigWig
1743
bed narrowPeak
1541
tsv
1353
fastq
1017
bigBed narrowPeak
392
tagAlign
318
bed broadPeak
281
bigBed broadPeak
269
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
154
Homo sapiens
Biosample type
153
primary cell
1
tissue
Organ
80
epithelium
80
pancreas
1
brain
Project
153
HPAP
1
AMP
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
153
Klaus Kaestner, Upenn
1
AMP-T2D consortium
assembly!
hg18
organ_slims!
artery
lung
BIOSAMPLE
ASSAY
154 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
ChIP-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
tissue
medial globus pallidus
1
Download