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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
95
target gene predictions
78
candidate regulatory elements
40
chromatin state
13
accessible chromatin
10
binding sites
7
histone modifications
4
gene expression
3
eQTL
Date released
110
September, 2022
56
February, 2021
54
February, 2024
9
June, 2020
8
November, 2021
May, 2021
4
March, 2024
3
August, 2017
3
January, 2022
2
October, 2022
1
March, 2020
Available data
206
bed bed3+
37
bed bed9
4
bigWig
4
tsv
Organism
250
Homo sapiens
Biosample type
143
tissue
96
cell line
11
primary cell
Organ
925
epithelium
652
kidney
455
brain
450
connective tissue
369
musculature of body
307
lung
283
intestine
266
vasculature
253
heart
244
pancreas
241
limb
214
bodily fluid
208
embryo
203
blood
201
blood vessel
199
skin of body
169
large intestine
153
liver
143
extraembryonic component
117
stomach
109
eye
89
bone element
85
mammary gland
84
adipose tissue
83
small intestine
81
uterus
76
prostate gland
73
artery
72
placenta
71
adrenal gland
64
ureter
63
penis
61
lymph node
49
gonad
48
thymus
45
esophagus
42
spinal cord
33
spleen
26
testis
25
nerve
24
lymphatic vessel
24
lymphoid tissue
22
ovary
22
thyroid gland
22
vein
19
mouth
18
skeleton
16
bronchus
13
bone marrow
12
breast
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
3
pituitary gland
1
pericardium
Project
242
AMP
8
ENCODE
Genome assembly (visualization)
243
hg19
101
GRCh38
assembly!
hg18
month_released!
May, 2021
BIOSAMPLE
TYPE
250 results
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target gene predictions
candidate regulatory elements
chromatin state
accessible chromatin
binding sites
histone modifications
gene expression
eQTL
tissue
large intestine
13
27
13
1
1
sigmoid colon
6
10
5
1
transverse colon
4
8
4
1
1
colonic mucosa
2
4
3
1
mucosa of rectum
2
4
3
+ See 11 more…
cell line
HeLa-S3
54
5
3
1
HT-29
1
2
1
1
1
1
SW480
1
2
1
1
1
1
HCT116
3
2
1
RKO
1
1
1
1
+ See 5 more…
primary cell
colon epithelial cell
3
3
Ishikawa
1
1
1
uterine smooth muscle cell
1
1
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