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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
27
total RNA-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
1
whole genome sequencing assay
Assay category
41
DNA binding
29
DNA accessibility
27
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
9
control
5
RNA binding protein
Date released
60
May, 2021
23
February, 2023
21
August, 2021
16
January, 2021
6
May, 2022
Available data
10
tsv
6
bam
6
fastq
6
txt
1
bedpe bed3+
1
vcf
Organism
126
Homo sapiens
Biosample type
42
in vitro differentiated cells
36
tissue
24
cell line
24
primary cell
Organ
35
pancreas
16
liver
8
blood
8
bodily fluid
2
kidney
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
70
AMP
56
T1D
Genome assembly (visualization)
hg19
181
GRCh38
Lab
987
AMP-T2D consortium
321
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
105
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
21
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
2
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
126 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
whole genome sequencing assay
in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
12
6
11
1
pancreas
1
4
thymus
1
cell line
HepG2
4
9
2
1
EndoC_BH1
3
2
HEK293T
2
Synthesized DNA
1
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
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