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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
single cell RNA-seq
99
total RNA-seq
28
snATAC-seq
21
ATAC-seq
17
pCHi-C
6
WGBS
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
211
Transcription
49
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Date released
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
19
April, 2020
18
February, 2021
17
May, 2021
16
January, 2021
7
August, 2020
5
March, 2023
2
March, 2020
Available data
142
fastq
19
zippedFastqFolder
10
bigWig
6
tsv
1
hic
Organism
284
Homo sapiens
Biosample type
185
primary cell
95
tissue
7
cell line
2
stem cell
Organ
97
pancreas
69
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
160
HPAP
58
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
197
GRCh38
hg19
Lab
160
Klaus Kaestner, Upenn
56
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
audit script error
1
inconsistent ontology term
assembly!
hg19
audit.ERROR.category!
audit script error
award.project!
AMP
month_released!
May, 2022
BIOSAMPLE
ASSAY
289 results
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Clear Filters
single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
pCHi-C
WGBS
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
pancreatic alpha cell
42
7
6
Langerhans cell
52
exocrine cell
39
pancreatic beta cell
11
3
peripheral blood mononuclear cell
8
+ See 16 more…
tissue
kidney
47
islet of Langerhans
7
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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