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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
30
total RNA-seq
2
STARR-seq
2
WGBS
2
pCHi-C
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
93
DNA binding
31
Transcription
2
DNA methylation
1
3D chromatin structure
1
DNA sequencing
Target of assay
84
control
9
transcription factor
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
August, 2017
24
May, 2020
20
May, 2022
17
August, 2021
13
December, 2017
4
November, 2018
1
December, 2018
1
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
Available data
89
bam
67
fastq
24
tagAlign
12
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
132
Homo sapiens
Biosample type
71
cell line
59
tissue
1
in vitro differentiated cells
1
primary cell
Organ
259
pancreas
225
kidney
205
heart
201
epithelium
132
liver
122
brain
89
bone element
71
blood vessel
71
vasculature
48
artery
34
connective tissue
27
eye
26
limb
23
adipose tissue
20
lung
14
blood
14
bodily fluid
12
musculature of body
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
132
AMP
Genome assembly (visualization)
hg19
485
GRCh38
Lab
96
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assembly!
hg19
audit.ERROR.category!
inconsistent control
month_released!
August, 2017
June, 2018
BIOSAMPLE
ASSAY
132 results
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ChIP-seq
total RNA-seq
STARR-seq
WGBS
pCHi-C
Hi-C
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
56
9
2
1
1
1
1
tissue
liver
32
20
1
1
right lobe of liver
3
1
1
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
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