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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
377
ChIP-seq
174
single cell RNA-seq
138
ATAC-seq
134
total RNA-seq
27
WGBS
27
snATAC-seq
23
pCHi-C
17
DNase-seq
5
Hi-C
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
2
RRBS
Assay category
377
DNA binding
308
Transcription
182
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
189
histone
189
histone modification
184
control
104
broad histone mark
85
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
228
August, 2021
104
August, 2017
79
October, 2019
76
November, 2017
62
February, 2023
47
September, 2023
40
May, 2024
29
October, 2018
27
May, 2022
24
February, 2020
23
May, 2020
22
May, 2019
20
March, 2020
19
April, 2020
17
July, 2019
16
June, 2019
15
April, 2019
14
May, 2023
12
December, 2017
9
February, 2021
9
November, 2018
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
259
bam
207
bed narrowPeak
155
tsv
132
tagAlign
125
bigWig
82
fastq
72
txt
68
bigBed narrowPeak
64
xls
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
1
bedpe bed3+
Organism
931
Homo sapiens
Biosample type
934
tissue
448
primary cell
99
cell line
89
in vitro differentiated cells
6
stem cell
Organ
207
kidney
200
heart
120
brain
93
liver
92
pancreas
65
connective tissue
64
adipose tissue
63
blood vessel
63
vasculature
46
artery
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
5
gonad
5
ovary
4
bone element
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
839
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1827
GRCh38
hg19
Lab
625
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
inconsistent ontology term
8
audit script error
Audit category:
missing controlled_by
assembly!
hg19
audit.ERROR.category!
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
934 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
WGBS
snATAC-seq
pCHi-C
DNase-seq
Hi-C
MeRIP-seq
RNA microarray
snDrop-seq
RRBS
tissue
kidney
7
64
75
49
6
islet of Langerhans
40
26
32
7
4
1
4
liver
62
1
20
3
1
left cardiac atrium
40
18
coronary artery
2
35
1
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