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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
323
ChIP-seq
174
single cell RNA-seq
138
ATAC-seq
132
total RNA-seq
27
snATAC-seq
21
WGBS
21
pCHi-C
17
DNase-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RNA microarray
2
RRBS
Assay category
323
DNA binding
306
Transcription
182
DNA accessibility
23
DNA methylation
5
3D chromatin structure
Target of assay
160
control
159
histone
159
histone modification
85
broad histone mark
74
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
227
August, 2021
78
October, 2019
76
November, 2017
62
August, 2017
62
February, 2023
47
September, 2023
40
May, 2024
27
May, 2022
23
May, 2020
22
February, 2020
22
May, 2019
19
April, 2020
18
March, 2020
17
July, 2019
16
June, 2019
15
April, 2019
14
May, 2023
12
December, 2017
11
October, 2018
10
October, 2017
9
February, 2021
9
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
238
bam
207
bed narrowPeak
151
tsv
126
tagAlign
123
bigWig
72
txt
68
bigBed narrowPeak
64
xls
61
fastq
17
bed broadPeak
16
bed bed3+
16
bigBed broadPeak
14
bed bedMethyl
14
bigBed bedMethyl
6
csv
1
bedpe bed3+
Organism
867
Homo sapiens
Biosample type
869
tissue
445
primary cell
100
cell line
68
in vitro differentiated cells
6
stem cell
Organ
207
kidney
200
heart
121
brain
93
liver
92
pancreas
connective tissue
64
adipose tissue
63
blood vessel
63
vasculature
46
artery
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
5
gonad
5
ovary
4
bone element
4
skeleton
3
epithelium
2
intestine
2
thymus
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
774
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1376
GRCh38
hg19
Lab
560
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assembly!
hg19
audit.ERROR.category!
inconsistent ontology term
organ_slims!
adrenal gland
connective tissue
BIOSAMPLE
ASSAY
869 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
WGBS
pCHi-C
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RNA microarray
RRBS
tissue
kidney
7
64
75
49
6
islet of Langerhans
39
26
32
7
4
1
4
liver
62
1
20
3
1
left cardiac atrium
40
18
coronary artery
2
35
1
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