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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
9
DNase-seq
6
single cell RNA-seq
3
snDrop-seq
2
RNA microarray
1
pCHi-C
Assay category
12
DNA binding
9
DNA accessibility
6
Transcription
Target of assay
7
control
4
histone
4
histone modification
4
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
9
October, 2019
8
February, 2021
7
June, 2019
5
April, 2019
3
December, 2019
1
March, 2020
Available data
15
bam
11
tsv
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
7
bigWig
5
csv
5
txt
Organism
33
Homo sapiens
Biosample type
24
tissue
9
primary cell
Organ
164
heart
130
liver
121
brain
89
connective tissue
72
pancreas
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
34
epithelium
28
kidney
27
eye
26
limb
22
musculature of body
12
nerve
11
spleen
6
blood
6
bodily fluid
6
embryo
5
gonad
5
ovary
5
vein
4
bone element
4
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
thymus
Project
33
AMP
Genome assembly (visualization)
115
GRCh38
hg19
Lab
141
Katalin Susztak, Upenn
47
KPMP
33
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
inconsistent ontology term
assembly!
hg19
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
DNase-seq
single cell RNA-seq
snDrop-seq
RNA microarray
pCHi-C
tissue
kidney
7
6
islet of Langerhans
4
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 4 more…
primary cell
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
epithelial cell of proximal tubule
1
kidney capillary endothelial cell
1
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