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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
64
ATAC-seq
59
total RNA-seq
12
ChIP-seq
6
snATAC-seq
4
STARR-seq
1
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
70
DNA accessibility
12
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
2
broad histone mark
2
histone
histone modification
Date released
254
August, 2021
161
May, 2022
152
February, 2023
81
May, 2020
69
October, 2019
59
August, 2017
59
September, 2020
58
November, 2017
57
February, 2021
47
September, 2023
37
May, 2021
29
October, 2018
27
June, 2019
26
March, 2020
24
February, 2020
22
May, 2019
19
April, 2020
17
July, 2019
17
November, 2018
16
January, 2021
14
April, 2019
14
December, 2017
14
May, 2023
8
February, 2018
7
August, 2020
5
December, 2018
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
November, 2020
4
October, 2017
4
September, 2017
3
December, 2019
2
March, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
108
tsv
64
bed narrowPeak
64
xls
57
txt
8
bam
8
tagAlign
1
bedpe bed3+
1
vcf
Organism
253
Homo sapiens
Biosample type
228
tissue
18
cell line
7
in vitro differentiated cells
1
primary cell
Organ
129
kidney
92
heart
17
liver
6
blood vessel
6
vasculature
2
artery
2
pancreas
1
adipose tissue
1
connective tissue
1
epithelium
Project
254
AMP
Genome assembly (visualization)
89
GRCh38
hg19
Lab
127
Katalin Susztak, Upenn
107
AMP-T2D consortium
20
Bing Ren, UCSD
Audit category:
inconsistent ontology term
assembly!
hg19
audit.ERROR.category!
inconsistent ontology term
organ_slims!
stomach
target.investigated_as!
RNA binding protein
histone modification
BIOSAMPLE
ASSAY
254 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
4
2
1
HEK293T
2
in vitro differentiated cells
neural progenitor cell
7
primary cell
hepatocyte
1
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