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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
12
total RNA-seq
10
DNase-seq
2
ATAC-seq
2
pCHi-C
Assay category
88
DNA binding
12
DNA accessibility
12
Transcription
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
18
control
Date released
76
November, 2017
12
February, 2020
10
June, 2019
10
October, 2017
October, 2019
3
May, 2019
2
March, 2020
1
July, 2019
Available data
81
bam
68
tagAlign
63
bigWig
62
bed narrowPeak
62
bigBed narrowPeak
14
tsv
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
4
fastq
Organism
114
Homo sapiens
Biosample type
114
tissue
Organ
278
pancreas
217
kidney
205
epithelium
205
heart
166
liver
114
brain
94
connective tissue
89
bone element
65
adipose tissue
61
blood vessel
61
vasculature
43
artery
23
musculature of body
20
lung
14
blood
14
bodily fluid
11
spleen
9
limb
8
embryo
6
eye
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
114
AMP
Genome assembly (visualization)
139
GRCh38
hg19
Lab
114
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
audit.ERROR.category!
inconsistent replicate
files.file_type!
hic
month_released!
October, 2019
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
layer of hippocampus
22
caudate nucleus
14
1
1
substantia nigra
14
1
cingulate gyrus
12
middle frontal area 46
12
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