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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
50
total RNA-seq
18
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
DNase-seq
Assay category
114
Transcription
82
DNA accessibility
18
DNA binding
Target of assay
17
control
1
RNA binding protein
1
transcription factor
Date released
127
August, 2021
47
September, 2023
14
May, 2023
13
October, 2019
8
February, 2021
5
April, 2019
3
December, 2019
1
February, 2020
1
June, 2019
Available data
65
bed narrowPeak
64
xls
62
txt
19
bam
11
tsv
5
csv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
bigWig
Organism
219
Homo sapiens
Biosample type
219
tissue
11
primary cell
7
cell line
Organ
207
kidney
200
heart
121
brain
93
liver
92
pancreas
88
bone element
65
connective tissue
64
adipose tissue
63
blood vessel
63
vasculature
46
artery
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
172
AMP
47
KPMP
Genome assembly (visualization)
196
GRCh38
hg19
Lab
141
Katalin Susztak, Upenn
47
KPMP
31
AMP-T2D consortium
Audit category:
7
audit script error
assembly!
hg19
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
219 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
DNase-seq
tissue
kidney
75
64
49
7
6
tibial nerve
1
11
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
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