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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
ChIP-seq
33
total RNA-seq
6
WGBS
5
Hi-C
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
140
DNA binding
34
Transcription
6
DNA methylation
5
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
111
control
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
8
transcription factor
3
RNA binding protein
3
recombinant protein
Date released
49
November, 2017
34
August, 2017
24
May, 2020
20
May, 2022
17
August, 2021
17
October, 2019
13
December, 2017
6
July, 2019
4
February, 2020
3
November, 2018
1
December, 2018
1
February, 2021
1
March, 2020
1
May, 2019
Available data
113
bam
74
fastq
44
tagAlign
15
tsv
6
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
csv
1
vcf
Organism
191
Homo sapiens
Biosample type
119
tissue
70
cell line
1
in vitro differentiated cells
1
primary cell
Organ
286
pancreas
218
kidney
207
epithelium
202
heart
165
liver
111
brain
94
connective tissue
89
bone element
70
blood vessel
70
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
7
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
191
AMP
Genome assembly (visualization)
hg19
575
GRCh38
Lab
155
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
missing controlled_by
assembly!
hg19
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
191 results
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ChIP-seq
total RNA-seq
WGBS
Hi-C
STARR-seq
pCHi-C
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
3
1
1
tibial nerve
11
1
right lobe of liver
3
1
1
1
tibial artery
5
1
gastrocnemius medialis
1
4
+ See 2 more…
cell line
HepG2
55
9
1
1
2
1
1
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
See all biosamples
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