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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
3
total RNA-seq
2
pCHi-C
1
ChIP-seq
1
WGBS
Assay category
4
3D chromatin structure
3
Transcription
1
DNA binding
1
DNA methylation
Target of assay
control
1
histone
1
histone modification
1
narrow histone mark
Date released
5
July, 2019
3
February, 2020
1
March, 2020
1
May, 2021
1
October, 2019
Available data
4
tsv
1
bam
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
11
Homo sapiens
Biosample type
11
tissue
Organ
237
pancreas
213
kidney
185
epithelium
185
heart
97
brain
89
bone element
72
liver
61
connective tissue
51
blood vessel
51
vasculature
41
adipose tissue
39
artery
26
eye
20
lung
17
musculature of body
9
limb
8
blood
8
bodily fluid
5
gonad
5
ovary
4
skeleton
3
spleen
3
vein
2
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
10
AMP
1
T1D
Genome assembly (visualization)
96
GRCh38
hg19
Lab
10
AMP-T2D consortium
1
Kyle Gaulton, UCSD
assembly!
hg19
audit.WARNING.category!
inconsistent control read length
target.investigated_as!
control
BIOSAMPLE
ASSAY
11 results
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Hi-C
total RNA-seq
pCHi-C
ChIP-seq
WGBS
tissue
gastrocnemius medialis
4
1
thymus
2
islet of Langerhans
1
muscle of leg
1
tibial artery
1
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