Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
total RNA-seq
65
ATAC-seq
51
WGBS
46
ChIP-seq
11
snATAC-seq
4
MeRIP-seq
2
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
78
DNA accessibility
73
Transcription
51
DNA methylation
46
DNA binding
1
3D chromatin structure
Target of assay
40
control
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
2
nucleotide modification
Date released
86
May, 2022
55
February, 2023
29
August, 2017
19
September, 2020
11
October, 2018
8
January, 2021
7
August, 2020
6
February, 2021
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
March, 2020
3
October, 2019
2
August, 2021
2
June, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
February, 2020
1
May, 2019
Available data
108
fastq
80
zippedFastqFolder
45
bam
16
bigWig
9
tsv
6
txt
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
253
Homo sapiens
Biosample type
161
primary cell
92
tissue
cell line
1
in vitro differentiated cells
Organ
254
pancreas
218
kidney
203
heart
186
epithelium
122
brain
95
connective tissue
liver
89
bone element
69
blood vessel
69
vasculature
65
adipose tissue
46
artery
27
eye
26
limb
23
musculature of body
20
lung
12
nerve
11
spleen
8
blood
8
bodily fluid
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
HPAP
77
AMP
28
T1D
Genome assembly (visualization)
hg19
580
GRCh38
Lab
149
Klaus Kaestner, Upenn
64
AMP-T2D consortium
33
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
audit script error
assembly!
hg19
audit.WARNING.category!
inconsistent control run_type
biosample_type!
cell line
organ_slims!
liver
BIOSAMPLE
ASSAY
254 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
WGBS
ChIP-seq
snATAC-seq
MeRIP-seq
DNase-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
42
29
31
6
pancreatic beta cell
11
16
16
6
pancreatic acinar cell
4
tissue
islet of Langerhans
18
16
19
7
4
1
body of pancreas
1
2
9
2
pancreas
1
2
3
4
1
endocrine pancreas
2
in vitro differentiated cells
pancreatic PP cell
1
Download