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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
20
total RNA-seq
16
ATAC-seq
11
snATAC-seq
4
MeRIP-seq
4
WGBS
2
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
33
DNA binding
29
DNA accessibility
20
Transcription
4
DNA methylation
1
3D chromatin structure
Target of assay
27
control
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
2
nucleotide modification
Date released
18
February, 2023
17
August, 2017
11
October, 2018
8
January, 2021
6
May, 2022
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
March, 2020
3
October, 2019
2
August, 2021
2
June, 2019
2
March, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
May, 2021
Available data
32
bam
27
fastq
6
bigWig
6
txt
4
bed bedMethyl
4
bigBed bedMethyl
4
tagAlign
3
bed broadPeak
3
tsv
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
91
Homo sapiens
Biosample type
161
primary cell
92
tissue
34
cell line
1
in vitro differentiated cells
Organ
207
kidney
200
heart
122
brain
93
liver
92
pancreas
88
bone element
65
connective tissue
64
adipose tissue
63
blood vessel
63
vasculature
46
artery
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
64
AMP
28
T1D
Genome assembly (visualization)
hg19
386
GRCh38
Lab
51
AMP-T2D consortium
33
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
audit script error
assembly!
hg19
audit.WARNING.category!
inconsistent control run_type
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
MeRIP-seq
WGBS
DNase-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
19
18
16
7
4
1
body of pancreas
9
1
2
2
pancreas
3
1
4
2
1
endocrine pancreas
2
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