Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
single cell RNA-seq
50
ATAC-seq
49
snATAC-seq
41
WGBS
17
pCHi-C
7
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
Assay category
99
DNA accessibility
67
Transcription
41
DNA methylation
1
3D chromatin structure
Date released
134
May, 2022
September, 2023
23
February, 2023
19
April, 2020
18
September, 2020
17
May, 2021
16
January, 2021
2
March, 2020
1
March, 2023
Available data
fastq
153
zippedFastqFolder
10
bigWig
6
tsv
1
hic
Organism
229
Homo sapiens
Biosample type
177
primary cell
48
tissue
5
cell line
Organ
108
pancreas
80
epithelium
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
152
HPAP
58
T1D
19
LungMap
community
1
ITG
Genome assembly (visualization)
hg19
187
GRCh38
Lab
152
Klaus Kaestner, Upenn
56
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
2
AMP-T2D consortium
1
ITG
Audit category:
1
inconsistent ontology term
assembly!
hg19
award.project!
AMP
community
files.file_type!
fastq
month_released!
September, 2023
BIOSAMPLE
ASSAY
230 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
primary cell
Langerhans cell
51
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
+ See 16 more…
tissue
islet of Langerhans
11
6
7
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
Download