Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ATAC-seq
14
ChIP-seq
14
total RNA-seq
11
snATAC-seq
10
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
42
DNA accessibility
14
DNA binding
14
Transcription
1
3D chromatin structure
Target of assay
11
control
8
histone
8
histone modification
5
nucleotide modification
4
broad histone mark
4
narrow histone mark
Date released
19
February, 2023
17
May, 2021
14
August, 2017
10
November, 2020
8
January, 2021
4
August, 2021
4
July, 2018
3
March, 2020
3
October, 2019
1
August, 2022
1
February, 2020
1
March, 2019
Available data
bam
39
fastq
6
bigWig
6
txt
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
3
tsv
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
84
Homo sapiens
Biosample type
60
tissue
25
cell line
Organ
205
kidney
176
heart
89
bone element
85
pancreas
70
liver
65
connective tissue
45
blood vessel
45
vasculature
44
adipose tissue
39
artery
34
brain
30
epithelium
26
eye
20
lung
19
musculature of body
8
blood
8
bodily fluid
8
limb
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
HPAP
57
AMP
28
T1D
Genome assembly (visualization)
hg19
4
GRCh38
Lab
45
AMP-T2D consortium
27
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
Audit category:
24
inconsistent ontology term
1
audit script error
assembly!
hg19
award.project!
HPAP
files.file_type!
bam
bed bed3
BIOSAMPLE
ASSAY
85 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
tissue
islet of Langerhans
15
14
12
7
4
1
pancreas
1
4
1
body of pancreas
1
cell line
EndoC_BH1
16
6
2
1
Download