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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
10
DNase-seq
3
ATAC-seq
Assay category
95
DNA binding
13
DNA accessibility
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
control
25
narrow histone mark
Date released
76
November, 2017
10
June, 2019
10
October, 2017
8
October, 2019
3
May, 2019
1
July, 2019
Available data
88
bam
75
tagAlign
63
bigWig
62
bed narrowPeak
62
bigBed narrowPeak
tsv
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
4
fastq
Organism
108
Homo sapiens
Biosample type
108
tissue
Organ
279
pancreas
204
epithelium
154
liver
108
brain
107
heart
91
connective tissue
89
bone element
72
kidney
62
adipose tissue
61
blood vessel
61
vasculature
44
artery
23
limb
22
eye
20
musculature of body
14
blood
14
bodily fluid
11
nerve
10
spleen
8
embryo
5
vein
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pituitary gland
1
skin of body
1
thymus
Project
108
AMP
Genome assembly (visualization)
205
GRCh38
hg19
Lab
108
AMP-T2D consortium
Audit category:
1
missing controlled_by
assembly!
hg19
award.project!
LungMap
files.file_type!
tsv
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
108 results
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ChIP-seq
DNase-seq
ATAC-seq
tissue
layer of hippocampus
22
caudate nucleus
14
1
substantia nigra
14
cingulate gyrus
12
middle frontal area 46
12
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