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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
4
Hi-C
2
RRBS
2
total RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
10
DNA binding
4
3D chromatin structure
3
DNA methylation
3
Transcription
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
narrow histone mark
Date released
9
August, 2017
5
July, 2019
2
February, 2020
2
June, 2019
1
March, 2020
1
May, 2019
1
May, 2022
Available data
4
bam
3
tsv
2
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
21
Homo sapiens
Biosample type
19
tissue
2
primary cell
Organ
284
pancreas
212
epithelium
190
heart
158
liver
97
brain
89
bone element
84
kidney
80
connective tissue
70
blood vessel
70
vasculature
55
adipose tissue
48
artery
25
eye
25
limb
21
musculature of body
14
blood
14
bodily fluid
12
nerve
11
spleen
7
embryo
4
skeleton
4
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
21
AMP
Genome assembly (visualization)
hg19
48
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
award.project!
LungMap
lab.title!
Katalin Susztak, Upenn
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
7
2
1
gastrocnemius medialis
4
1
muscle of leg
1
1
left ventricle myocardium
1
psoas muscle
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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