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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
total RNA-seq
6
MeRIP-seq
5
STARR-seq
4
ChIP-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
11
Transcription
4
DNA binding
1
DNA sequencing
Target of assay
7
control
3
nucleotide modification
Date released
19
August, 2021
6
November, 2020
2
March, 2023
Available data
9
tsv
1
vcf
Organism
25
Homo sapiens
Biosample type
322
primary cell
282
tissue
in vitro differentiated cells
27
cell line
2
stem cell
Organ
16
liver
6
epithelium
6
pancreas
2
kidney
Project
25
AMP
T1D
2
community
Genome assembly (visualization)
hg19
Lab
AMP-T2D consortium
19
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
7
inconsistent ontology term
assembly!
hg19
award.project!
T1D
biosample_type!
in vitro differentiated cells
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
27 results
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total RNA-seq
MeRIP-seq
STARR-seq
ChIP-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
9
2
4
1
EndoC_BH1
6
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
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