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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
30
total RNA-seq
5
WGBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
123
DNA binding
31
Transcription
5
DNA methylation
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
94
control
20
histone
20
histone modification
12
broad histone mark
9
transcription factor
8
narrow histone mark
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
34
August, 2017
24
May, 2020
20
May, 2022
17
August, 2021
13
December, 2017
October, 2019
4
November, 2018
1
December, 2018
1
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
Available data
96
bam
75
fastq
44
tagAlign
12
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
166
Homo sapiens
Biosample type
93
tissue
71
cell line
1
in vitro differentiated cells
1
primary cell
Organ
250
pancreas
217
kidney
205
epithelium
205
heart
166
liver
114
brain
93
connective tissue
88
bone element
65
adipose tissue
61
blood vessel
61
vasculature
43
artery
23
musculature of body
20
lung
11
spleen
9
limb
8
embryo
6
blood
6
bodily fluid
6
eye
4
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
0
vein
Project
166
AMP
Genome assembly (visualization)
hg19
524
GRCh38
Lab
130
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assembly!
hg19
award.project!
T1D
month_released!
October, 2019
BIOSAMPLE
ASSAY
166 results
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ChIP-seq
total RNA-seq
WGBS
STARR-seq
pCHi-C
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
3
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
56
9
1
2
1
1
1
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
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