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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
60
ChIP-seq
35
ATAC-seq
8
WGBS
4
pCHi-C
3
DNase-seq
3
total RNA-seq
Assay category
96
Transcription
60
DNA binding
38
DNA accessibility
8
DNA methylation
Target of assay
35
histone
35
histone modification
20
broad histone mark
20
control
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
10
April, 2019
8
July, 2019
6
May, 2019
5
June, 2019
4
March, 2020
3
February, 2020
2
February, 2021
Available data
99
tsv
78
bed narrowPeak
49
bigWig
29
bam
6
bed bedMethyl
6
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
206
Homo sapiens
Biosample type
201
tissue
3
primary cell
2
cell line
Organ
260
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
94
connective tissue
88
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
12
nerve
11
spleen
8
embryo
6
blood
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
206
AMP
Genome assembly (visualization)
266
GRCh38
hg19
Lab
166
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
assembly!
hg19
award.project!
T1D
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
206 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
DNase-seq
total RNA-seq
tissue
left cardiac atrium
18
40
coronary artery
2
35
1
heart left ventricle
18
6
4
1
heart right ventricle
17
2
2
1
right cardiac atrium
18
1
1
1
+ See 11 more…
primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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