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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
35
ATAC-seq
7
single cell RNA-seq
6
total RNA-seq
4
Hi-C
3
WGBS
2
RRBS
2
pCHi-C
1
DNase-seq
Assay category
47
DNA binding
36
DNA accessibility
13
Transcription
5
DNA methylation
4
3D chromatin structure
Target of assay
37
control
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
Date released
35
February, 2023
22
October, 2019
12
May, 2019
11
August, 2017
7
July, 2019
6
August, 2021
6
February, 2020
3
June, 2019
2
February, 2021
2
March, 2020
1
May, 2022
Available data
41
bam
36
bed narrowPeak
14
tsv
4
tagAlign
3
bigWig
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
107
Homo sapiens
Biosample type
97
tissue
8
primary cell
2
cell line
Organ
260
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
94
connective tissue
88
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
12
nerve
11
spleen
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
107
AMP
Genome assembly (visualization)
281
GRCh38
hg19
Lab
107
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
award.project!
T1D
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
Hi-C
WGBS
RRBS
pCHi-C
DNase-seq
tissue
coronary artery
2
35
1
skeletal muscle tissue
9
1
2
tibial nerve
11
1
aorta
2
4
2
1
tibial artery
5
1
+ See 8 more…
primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
skeletal muscle cell
1
skeletal muscle satellite cell
1
cell line
smooth muscle cell of the coronary artery
2
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