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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 566ChIP-seq
  • 210ATAC-seq
  • 149total RNA-seq
  • 122single cell RNA-seq
  • 87RNA microarray
  • 36pCHi-C
  • 28WGBS
  • 26DNase-seq
  • 10MeRIP-seq
  • 7snATAC-seq
  • 6Hi-C
  • 5GRO-seq
  • 5STARR-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2RRBS
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
  • 1whole genome sequencing assay
Assay category
  • 566DNA binding
  • 271Transcription
  • 243DNA accessibility
  • 31DNA methylation
  • 63D chromatin structure
  • 1DNA sequencing
Target of assay
  • 311control
  • 233histone
  • 233histone modification
  • 130broad histone mark
  • 103narrow histone mark
  • 27transcription factor
  • 14RNA binding protein
  • 5nucleotide modification
  • 4recombinant protein
Date released
  • 259August, 2021
  • 135August, 2017
  • 125November, 2017
  • 97October, 2019
  • 96February, 2021
  • 81May, 2020
  • 66May, 2021
  • 61February, 2023
  • 40May, 2024
  • 31June, 2019
  • 30March, 2020
  • 29October, 2018
  • 27May, 2022
  • 25February, 2020
  • 23May, 2019
  • 17December, 2017
  • 17July, 2019
  • 17November, 2018
  • 15April, 2019
  • 14May, 2023
  • 10November, 2020
  • 10October, 2017
  • 8February, 2018
  • 5December, 2018
  • 5December, 2019
  • 5January, 2018
  • 4January, 2019
  • 4July, 2018
  • 4September, 2017
  • 2March, 2019
  • 2November, 2019
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
  • 1September, 2018
Available data
  • 394bam
  • 219bed narrowPeak
  • 192tsv
  • 181fastq
  • 160tagAlign
  • 157txt
  • 143bigWig
  • 79bigBed narrowPeak
  • 64xls
  • 24bed broadPeak
  • 23bed bed3+
  • 23bigBed broadPeak
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 8csv
  • 2bedpe bed3+
  • 1vcf
Organism
  • 1264Homo sapiens
Biosample type
  • 927tissue
  • 125cell line
  • 114primary cell
  • 97in vitro differentiated cells
  • 5stem cell
Organ
  • 205heart
  • 178kidney
  • 166liver
  • 122brain
  • 111pancreas
  • 94connective tissue
  • 88bone element
  • 71blood vessel
  • 71vasculature
  • 65adipose tissue
  • 64epithelium
  • 48artery
  • 27eye
  • 26limb
  • 23musculature of body
  • 12nerve
  • 11spleen
  • 8embryo
  • 6blood
  • 6bodily fluid
  • 5gonad
  • 5ovary
  • 5vein
  • 4skeleton
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1268AMP
  • 321HPAP
  • 58T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • hg19
  • 2930GRCh38
  • 5hg18
Lab
  • 985AMP-T2D consortium
  • 141Katalin Susztak, Upenn
  • 49Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 21Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 138inconsistent ontology term
  • 10audit script error
Audit category:
  • 3missing controlled_by
assembly!
  • hg19
BIOSAMPLE
ASSAY

1268 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
DNase-seq
MeRIP-seq
snATAC-seq
Hi-C
GRO-seq
STARR-seq
snDrop-seq
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
whole genome sequencing assay
tissue
kidney77549176
islet of Langerhans4015254411
liver6220113
bone element84
left cardiac atrium4018
cell line
HepG256911121
EndoC_BH1216621
Panc17
GM128786
HEK293T2
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell2221
CD4-positive, alpha-beta memory T cell22
macrophage11
pancreatic alpha cell6
pancreatic beta cell6
in vitro differentiated cells
embryonic stem cell3851
adipocyte191
neural progenitor cell9
pancreatic endoderm51
cardiomyocytes (cardiac muscle cell)21
stem cell
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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