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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 158total RNA-seq
  • 152single cell RNA-seq
  • 135ATAC-seq
  • 82snATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 5STARR-seq
  • 4ChIP-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Hi-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 314Transcription
  • 217DNA accessibility
  • 47DNA methylation
  • 4DNA binding
  • 23D chromatin structure
  • 1DNA sequencing
Target of assay
  • 4control
Date released
  • 148August, 2021
  • 134May, 2022
  • 99February, 2023
  • 59September, 2020
  • 47September, 2023
  • 45February, 2021
  • 19April, 2020
  • 17May, 2021
  • 16January, 2021
  • 14May, 2023
  • 7August, 2020
  • 5March, 2023
  • 2March, 2020
Available data
  • 169fastq
  • 153zippedFastqFolder
  • 64bed narrowPeak
  • 64xls
  • 57txt
  • 16tsv
  • 10bigWig
  • 1bedpe bed3+
  • 1hic
  • 1vcf
Organism
  • 607Homo sapiens
Biosample type
  • 346primary cell
  • 238tissue
  • 26cell line
  • 2stem cell
Organ
  • 190kidney
  • 179pancreas
  • 149epithelium
  • 19lung
  • 16liver
  • 8blood
  • 8bodily fluid
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • 321HPAP
  • 162AMP
  • 58T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 274GRCh38
  • hg19
Lab
  • 321Klaus Kaestner, Upenn
  • 141Katalin Susztak, Upenn
  • 56Kyle Gaulton, UCSD
  • 47KPMP
  • 21Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
  • 2AMP-T2D consortium
  • 1ITG
Audit category:
  • 27audit script error
  • 2inconsistent ontology term
assembly!
  • hg19
award.rfa!
  • AMP
BIOSAMPLE
ASSAY

612 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
STARR-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
Langerhans cell8548
pancreatic alpha cell422931
pancreatic beta cell111616
exocrine cell39
peripheral blood mononuclear cell8
tissue
kidney4958756
islet of Langerhans81161
lung910
pancreas4
thymus1
cell line
HepG29241
EndoC_BH132
EndoC-BH111
HEK293T2
Synthesized DNA1
stem cell
SB Ad3.111
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