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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 75ATAC-seq
  • 59total RNA-seq
  • 11single cell RNA-seq
  • 7snATAC-seq
  • 5STARR-seq
  • 4ChIP-seq
  • 1Hi-C
  • 1whole genome sequencing assay
Assay category
  • 82DNA accessibility
  • 70Transcription
  • 4DNA binding
  • 13D chromatin structure
  • 1DNA sequencing
Target of assay
  • 4control
Date released
  • 148August, 2021
  • 14May, 2023
  • 1July, 2025
Available data
  • 64bed narrowPeak
  • 64xls
  • 57txt
  • 11tsv
  • 1bed bed3+
  • 1bedpe bed3+
  • 1tbi
  • 1vcf
Organism
  • 162Homo sapiens
Biosample type
  • 144tissue
  • 19cell line
Organ
  • 143kidney
  • 16liver
  • 2pancreas
  • 1musculature of body
Project
  • 163AMP
Genome assembly (visualization)
  • 78GRCh38
  • hg19
Lab
  • 141Katalin Susztak, Upenn
  • 21Bing Ren, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 1inconsistent ontology term
assembly!
  • hg19
BIOSAMPLE
ASSAY

163 results

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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
STARR-seq
ChIP-seq
Hi-C
whole genome sequencing assay
tissue
kidney7549116
islet of Langerhans11
skeletal muscle tissue1
cell line
HepG29241
HEK293T2
Synthesized DNA1
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