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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
59
total RNA-seq
11
single cell RNA-seq
7
snATAC-seq
5
STARR-seq
4
ChIP-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
82
DNA accessibility
70
Transcription
4
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
4
control
Date released
148
August, 2021
14
May, 2023
1
July, 2025
Available data
64
bed narrowPeak
64
xls
57
txt
11
tsv
1
bed bed3+
1
bedpe bed3+
1
tbi
1
vcf
Organism
162
Homo sapiens
Biosample type
144
tissue
19
cell line
Organ
143
kidney
16
liver
2
pancreas
1
musculature of body
Project
163
AMP
Genome assembly (visualization)
78
GRCh38
hg19
Lab
141
Katalin Susztak, Upenn
21
Bing Ren, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
163 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
STARR-seq
ChIP-seq
Hi-C
whole genome sequencing assay
tissue
kidney
75
49
11
6
islet of Langerhans
1
1
skeletal muscle tissue
1
cell line
HepG2
9
2
4
1
HEK293T
2
Synthesized DNA
1
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