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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 56ChIP-seq
  • 9total RNA-seq
  • 2STARR-seq
  • 1Hi-C
  • 1WGBS
  • 1pCHi-C
  • 1whole genome sequencing assay
Assay category
  • 56DNA binding
  • 9Transcription
  • 13D chromatin structure
  • 1DNA methylation
  • 1DNA sequencing
Target of assay
  • 47control
  • 9transcription factor
  • 4recombinant protein
  • 3RNA binding protein
Date released
  • 49November, 2017
  • 16August, 2021
  • 4November, 2018
  • 1December, 2018
  • 1May, 2020
Available data
  • 54fastq
  • 52bam
  • 10tsv
  • 5bigWig
  • 4bed narrowPeak
  • 4bigBed narrowPeak
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1vcf
Organism
  • 71Homo sapiens
Biosample type
  • 71cell line
Organ
  • 71liver
Project
  • 71AMP
Genome assembly (visualization)
  • hg19
  • 268GRCh38
Lab
  • 55AMP-T2D consortium
  • 16Bing Ren, UCSD
Audit category:
  • 1missing controlled_by
assembly!
  • hg19
BIOSAMPLE
ASSAY

71 results

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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
WGBS
pCHi-C
whole genome sequencing assay
cell line
HepG256921111
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