Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 40ChIP-seq
  • 32total RNA-seq
  • 26ATAC-seq
  • 7snATAC-seq
  • 4MeRIP-seq
  • 4pCHi-C
  • 1Hi-C
Assay category
  • 40DNA binding
  • 33DNA accessibility
  • 32Transcription
  • 13D chromatin structure
Target of assay
  • 29histone
  • 29histone modification
  • 25narrow histone mark
  • 13control
  • 4broad histone mark
  • 2nucleotide modification
Date released
  • 52October, 2019
  • 18February, 2023
  • 15August, 2017
  • 6May, 2022
  • 4January, 2021
  • 4July, 2018
  • 4November, 2020
  • 4September, 2017
  • 2August, 2021
  • 2March, 2019
  • 2March, 2020
  • 1August, 2022
Available data
  • 12bam
  • 12fastq
  • 6txt
  • 3tagAlign
  • 1bed broadPeak
  • 1bedpe bed3+
  • 1tsv
Organism
  • 114Homo sapiens
Biosample type
  • 114tissue
Organ
  • 65pancreas
  • 21eye
  • 4gonad
  • 4ovary
  • 1brain
  • 1connective tissue
  • 1limb
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 90AMP
  • 24T1D
Genome assembly (visualization)
  • hg19
  • 314GRCh38
Lab
  • 78AMP-T2D consortium
  • 28Kyle Gaulton, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 1audit script error
assembly!
  • hg19
BIOSAMPLE
ASSAY

114 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
MeRIP-seq
pCHi-C
Hi-C
tissue
islet of Langerhans4032267441
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego