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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 489ChIP-seq
  • 263single cell RNA-seq
  • 254ATAC-seq
  • 239total RNA-seq
  • 87RNA microarray
  • 83snATAC-seq
  • 74WGBS
  • 48pCHi-C
  • 26DNase-seq
  • 6Hi-C
  • 5GRO-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
Assay category
  • 504Transcription
  • 489DNA binding
  • 363DNA accessibility
  • 77DNA methylation
  • 63D chromatin structure
Target of assay
  • 241control
  • 232histone
  • 232histone modification
  • 129broad histone mark
  • 103narrow histone mark
  • 18transcription factor
  • 11RNA binding protein
  • 2nucleotide modification
Date released
  • 238August, 2021
  • 161May, 2022
  • 154February, 2023
  • 138February, 2021
  • 135August, 2017
  • 87October, 2019
  • 80May, 2020
  • 76November, 2017
  • 67May, 2021
  • 59September, 2020
  • 47September, 2023
  • 40May, 2024
  • 31June, 2019
  • 29October, 2018
  • 28March, 2020
  • 25February, 2020
  • 23May, 2019
  • 19April, 2020
  • 17December, 2017
  • 17July, 2019
  • 16January, 2021
  • 15April, 2019
  • 14May, 2023
  • 10November, 2018
  • 10October, 2017
  • 8February, 2018
  • 7August, 2020
  • 5December, 2019
  • 5January, 2018
  • 4December, 2018
  • 4July, 2018
  • 4November, 2020
  • 4September, 2017
  • 3March, 2023
  • 2March, 2019
  • 1August, 2018
  • 1August, 2022
  • 1January, 2019
  • 1September, 2018
Available data
  • 321bam
  • 290fastq
  • 215bed narrowPeak
  • 184tsv
  • 157tagAlign
  • 156txt
  • 153zippedFastqFolder
  • 148bigWig
  • 75bigBed narrowPeak
  • 64xls
  • 24bed broadPeak
  • 23bed bed3+
  • 23bigBed broadPeak
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 8csv
  • 2bedpe bed3+
  • 1hic
Organism
  • 1581Homo sapiens
Biosample type
  • 1022tissue
  • 460primary cell
  • cell line
  • 97in vitro differentiated cells
  • 7stem cell
Organ
  • 254pancreas
  • 218kidney
  • 203heart
  • 186epithelium
  • 122brain
  • 95connective tissue
  • 95liver
  • 89bone element
  • 69blood vessel
  • 69vasculature
  • 65adipose tissue
  • 46artery
  • 27eye
  • 26limb
  • 23musculature of body
  • 20lung
  • 12nerve
  • 11spleen
  • 8blood
  • 8bodily fluid
  • 8embryo
  • 5gonad
  • 5ovary
  • 5vein
  • 4skeleton
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 1143AMP
  • 321HPAP
  • 53T1D
  • 47KPMP
  • 19LungMap
  • 2community
  • 1ITG
Genome assembly (visualization)
  • hg19
  • 2663GRCh38
  • 5hg18
Lab
  • 887AMP-T2D consortium
  • 321Klaus Kaestner, Upenn
  • 141Katalin Susztak, Upenn
  • 100Kyle Gaulton, UCSD
  • 47KPMP
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Anna Gloyn, Oxford
  • 2Bing Ren, UCSD
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 107inconsistent ontology term
  • 37audit script error
Audit category:
  • 2missing controlled_by
assembly!
  • hg19
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

1586 results

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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
DNase-seq
Hi-C
GRO-seq
MeRIP-seq
snDrop-seq
RRBS
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
tissue
kidney76475496
islet of Langerhans4026327414
liver6212031
bone element84
left cardiac atrium4018
primary cell
Langerhans cell8548
pancreatic alpha cell6294231
pancreatic beta cell6161116
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell22211
in vitro differentiated cells
embryonic stem cell3851
adipocyte191
neural progenitor cell9
pancreatic endoderm51
cardiomyocytes (cardiac muscle cell)21
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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