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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ATAC-seq
96
ChIP-seq
23
DNase-seq
Assay category
122
DNA accessibility
96
DNA binding
Target of assay
87
histone
87
histone modification
56
broad histone mark
31
narrow histone mark
9
transcription factor
6
RNA binding protein
3
recombinant protein
Date released
64
August, 2021
54
November, 2017
40
May, 2024
35
February, 2023
23
June, 2019
2
November, 2018
Available data
367
bam
327
fastq
218
bed narrowPeak
193
tsv
157
txt
153
zippedFastqFolder
148
bigWig
137
tagAlign
79
bigBed narrowPeak
64
xls
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
8
csv
1
bedpe bed3+
1
hic
1
vcf
Organism
218
Homo sapiens
Biosample type
207
tissue
7
primary cell
4
cell line
in vitro differentiated cells
Organ
78
heart
71
kidney
62
brain
36
blood vessel
36
vasculature
35
artery
6
epithelium
4
liver
2
pancreas
1
connective tissue
Project
218
AMP
Genome assembly (visualization)
1504
GRCh38
hg19
Lab
114
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
assembly!
hg19
biosample_type!
in vitro differentiated cells
organ_slims!
ovary
BIOSAMPLE
ASSAY
218 results
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ATAC-seq
ChIP-seq
DNase-seq
tissue
kidney
64
left cardiac atrium
40
coronary artery
35
layer of hippocampus
16
caudate nucleus
11
1
+ See 17 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
kidney glomerular epithelial cell
1
cell line
HepG2
4
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