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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
ChIP-seq
98
total RNA-seq
36
single cell RNA-seq
27
snATAC-seq
17
WGBS
12
ATAC-seq
1
GRO-seq
1
Hi-C
Assay category
135
DNA binding
134
Transcription
39
DNA accessibility
17
DNA methylation
1
3D chromatin structure
Target of assay
125
control
9
transcription factor
4
recombinant protein
3
RNA binding protein
1
broad histone mark
1
histone
1
histone modification
Date released
76
February, 2023
49
November, 2017
45
February, 2021
41
September, 2020
27
August, 2017
27
October, 2018
17
November, 2018
12
December, 2017
7
August, 2020
6
May, 2022
5
December, 2018
4
January, 2019
4
October, 2017
4
September, 2017
1
January, 2018
1
March, 2019
1
September, 2018
Available data
367
bam
327
fastq
218
bed narrowPeak
193
tsv
157
txt
153
zippedFastqFolder
148
bigWig
137
tagAlign
79
bigBed narrowPeak
64
xls
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
8
csv
1
bedpe bed3+
1
hic
1
vcf
Organism
326
Homo sapiens
Biosample type
183
primary cell
83
tissue
60
cell line
in vitro differentiated cells
1
stem cell
Organ
108
pancreas
81
epithelium
74
liver
22
adipose tissue
22
connective tissue
10
spleen
6
blood
6
bodily fluid
4
brain
Project
169
HPAP
158
AMP
Genome assembly (visualization)
hg19
833
GRCh38
1
hg18
Lab
169
Klaus Kaestner, Upenn
151
AMP-T2D consortium
6
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
audit script error
Audit category:
2
missing controlled_by
assembly!
hg19
biosample_type!
in vitro differentiated cells
files.file_type!
tar
organ_slims!
thymus
BIOSAMPLE
ASSAY
327 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
GRO-seq
Hi-C
primary cell
Langerhans cell
34
27
pancreatic alpha cell
6
42
6
7
exocrine cell
39
pancreatic beta cell
6
11
3
pancreatic cell
2
tissue
liver
16
1
islet of Langerhans
5
6
1
body of pancreas
8
2
spleen
8
2
subcutaneous adipose tissue
10
+ See 6 more…
cell line
HepG2
52
1
1
GM12878
6
stem cell
hESC
1
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