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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
65
ATAC-seq
59
total RNA-seq
12
WGBS
6
snATAC-seq
5
ChIP-seq
5
Hi-C
5
STARR-seq
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
71
DNA accessibility
12
DNA methylation
5
3D chromatin structure
5
DNA binding
1
DNA sequencing
Target of assay
5
control
Date released
250
August, 2021
161
May, 2022
156
February, 2023
141
February, 2021
125
November, 2017
116
August, 2017
96
October, 2019
81
May, 2020
59
September, 2020
47
September, 2023
40
May, 2021
40
May, 2024
31
June, 2019
30
March, 2020
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
July, 2019
17
November, 2018
16
January, 2021
15
April, 2019
14
May, 2023
12
December, 2017
10
November, 2020
10
October, 2017
7
August, 2020
5
December, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
3
December, 2019
2
March, 2019
2
November, 2019
1
August, 2022
1
January, 2018
1
October, 2022
1
September, 2018
Available data
108
tsv
64
bed narrowPeak
64
xls
57
txt
11
bam
9
bigWig
8
bed bedMethyl
8
bigBed bedMethyl
1
bedpe bed3+
1
tagAlign
1
vcf
Organism
266
Homo sapiens
Biosample type
245
tissue
21
cell line
in vitro differentiated cells
1
primary cell
Organ
129
kidney
100
heart
18
liver
8
blood vessel
8
vasculature
5
limb
5
musculature of body
4
pancreas
3
epithelium
2
artery
1
adipose tissue
1
brain
1
connective tissue
Project
267
AMP
Genome assembly (visualization)
154
GRCh38
hg19
Lab
127
Katalin Susztak, Upenn
119
AMP-T2D consortium
21
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assembly!
hg19
biosample_type!
in vitro differentiated cells
organ_slims!
skin of body
BIOSAMPLE
ASSAY
267 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
WGBS
snATAC-seq
ChIP-seq
Hi-C
STARR-seq
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
heart left ventricle
18
4
heart right ventricle
17
2
right cardiac atrium
18
1
left cardiac atrium
18
+ See 16 more…
cell line
HepG2
9
4
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
1
See all biosamples
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