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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
16
ATAC-seq
16
pCHi-C
6
total RNA-seq
1
DNAme array
Assay category
42
DNA binding
16
DNA accessibility
6
Transcription
1
DNA methylation
Target of assay
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
12
transcription factor
6
control
5
RNA binding protein
Date released
134
May, 2022
81
May, 2021
58
May, 2020
31
August, 2021
22
February, 2023
18
October, 2019
18
September, 2020
15
June, 2019
14
August, 2017
10
March, 2020
8
January, 2021
6
November, 2020
5
March, 2023
3
February, 2021
2
December, 2019
2
November, 2019
1
May, 2019
1
October, 2022
Available data
1
bam
1
tagAlign
Organism
81
Homo sapiens
Biosample type
43
in vitro differentiated cells
22
primary cell
16
cell line
tissue
Organ
17
epithelium
17
pancreas
1
bone element
1
bone marrow
1
connective tissue
Project
65
AMP
16
T1D
Genome assembly (visualization)
hg19
238
GRCh38
Lab
58
Kyle Gaulton, UCSD
23
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
assembly!
hg19
biosample_type!
tissue
files.file_type!
fastq
month_released!
June, 2018
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
in vitro differentiated cells
embryonic stem cell
37
5
pancreatic PP cell
1
primary cell
monocyte
1
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
B cell
1
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cell line
EndoC_BH1
16
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