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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
9
total RNA-seq
5
STARR-seq
2
Capture-C
1
whole genome sequencing assay
Assay category
22
DNA binding
9
Transcription
1
DNA sequencing
Target of assay
20
control
2
broad histone mark
2
histone
2
histone modification
Date released
134
May, 2022
98
February, 2023
81
May, 2021
59
September, 2020
58
May, 2020
49
November, 2017
48
February, 2021
31
August, 2017
31
August, 2021
18
October, 2019
15
June, 2019
10
March, 2020
8
February, 2018
8
January, 2021
8
November, 2018
7
August, 2020
6
November, 2020
5
December, 2017
5
January, 2018
5
March, 2023
3
January, 2019
2
December, 2019
2
November, 2019
1
August, 2018
1
December, 2018
1
May, 2019
1
October, 2022
September, 2018
Available data
17
bam
9
tagAlign
9
tsv
8
fastq
1
bed narrowPeak
1
bigWig
1
vcf
Organism
39
Homo sapiens
Biosample type
tissue
21
cell line
17
in vitro differentiated cells
1
primary cell
Organ
17
liver
3
embryo
3
epithelium
2
kidney
2
pancreas
Project
39
AMP
Genome assembly (visualization)
hg19
72
GRCh38
Lab
20
AMP-T2D consortium
19
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assembly!
hg19
biosample_type!
tissue
month_released!
September, 2018
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
total RNA-seq
STARR-seq
Capture-C
whole genome sequencing assay
cell line
HepG2
4
9
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
9
pancreatic endoderm
3
definitive endodermal cell
1
embryonic stem cell
1
endocrine cell
1
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primary cell
hepatocyte
1
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