Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 188ChIP-seq
  • 132ATAC-seq
  • 113total RNA-seq
  • 89single cell RNA-seq
  • 56snATAC-seq
  • 48WGBS
  • 28pCHi-C
  • 9DNase-seq
  • 6MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2Hi-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 206Transcription
  • 197DNA accessibility
  • 188DNA binding
  • 49DNA methylation
  • 23D chromatin structure
  • 1DNA sequencing
Target of assay
  • 127control
  • 43histone
  • 43histone modification
  • 25broad histone mark
  • 21transcription factor
  • 18narrow histone mark
  • 8RNA binding protein
  • 4recombinant protein
  • 3nucleotide modification
Date released
  • 134May, 2022
  • 98February, 2023
  • 81May, 2021
  • 59September, 2020
  • 58May, 2020
  • 49November, 2017
  • 48February, 2021
  • 31August, 2017
  • 31August, 2021
  • 18October, 2019
  • 15June, 2019
  • 10March, 2020
  • 8February, 2018
  • 8January, 2021
  • 8November, 2018
  • 7August, 2020
  • 6November, 2020
  • 5December, 2017
  • 5January, 2018
  • 5March, 2023
  • 3January, 2019
  • 2December, 2019
  • 2November, 2019
  • 1August, 2018
  • 1December, 2018
  • 1May, 2019
  • 1October, 2022
  • 1September, 2018
Available data
  • 267fastq
  • 153zippedFastqFolder
  • 135bam
  • 40tsv
  • 28bigWig
  • 27tagAlign
  • 12bed narrowPeak
  • 11bigBed narrowPeak
  • 7bed bed3+
  • 7bed broadPeak
  • 7bigBed broadPeak
  • 2csv
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1hic
  • 1txt
  • 1vcf
Organism
  • 690Homo sapiens
Biosample type
  • tissue
  • 460primary cell
  • 132cell line
  • 97in vitro differentiated cells
  • 7stem cell
Organ
  • 210epithelium
  • 196pancreas
  • 73liver
  • 30connective tissue
  • 18kidney
  • 14blood
  • 14bodily fluid
  • 8blood vessel
  • 8embryo
  • 8vasculature
  • 5heart
  • 5vein
  • 2artery
  • 2musculature of body
  • 1adipose tissue
  • 1bone element
  • 1bone marrow
  • 1eye
  • 1mammary gland
Project
  • 341AMP
  • 321HPAP
  • 29T1D
  • 4community
  • 1ITG
Genome assembly (visualization)
  • hg19
  • 1268GRCh38
  • 5hg18
Lab
  • 321Klaus Kaestner, Upenn
  • 274AMP-T2D consortium
  • 71Kyle Gaulton, UCSD
  • 19Bing Ren, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 52inconsistent ontology term
  • 29audit script error
Audit category:
  • 2missing controlled_by
assembly!
  • hg19
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

696 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
DNase-seq
MeRIP-seq
GRO-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
Hi-C
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNAme array
MPRA
...and 3 more
primary cell
Langerhans cell8548
pancreatic alpha cell6294231
pancreatic beta cell6161116
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell22211
cell line
HepG25691121
EndoC_BH121663221
Panc17
GM128786
EndoC-BH1
in vitro differentiated cells
embryonic stem cell3851
adipocyte191
neural progenitor cell9
pancreatic endoderm51
cardiomyocytes (cardiac muscle cell)21
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego