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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
156
ChIP-seq
16
ATAC-seq
14
total RNA-seq
8
pCHi-C
6
MeRIP-seq
5
STARR-seq
4
GRO-seq
2
Capture-C
2
single cell RNA-seq
1
Hi-C
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
156
DNA binding
18
Transcription
16
DNA accessibility
1
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
102
control
36
histone
36
histone modification
21
broad histone mark
21
transcription factor
15
narrow histone mark
8
RNA binding protein
4
recombinant protein
3
nucleotide modification
Date released
59
May, 2021
49
November, 2017
30
August, 2021
19
August, 2017
February, 2023
10
October, 2019
8
February, 2018
7
November, 2018
6
March, 2020
6
November, 2020
5
December, 2017
4
January, 2018
3
February, 2021
3
January, 2019
2
December, 2019
2
March, 2023
2
November, 2019
1
August, 2018
1
December, 2018
1
May, 2020
1
October, 2022
Available data
100
bam
83
fastq
26
tagAlign
18
tsv
10
bigWig
5
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
txt
1
vcf
Organism
216
Homo sapiens
Biosample type
960
tissue
372
primary cell
126
cell line
93
in vitro differentiated cells
7
stem cell
Organ
72
liver
34
pancreas
30
epithelium
20
connective tissue
8
embryo
7
kidney
6
blood
6
bodily fluid
2
artery
2
blood vessel
2
heart
2
vasculature
1
adipose tissue
1
mammary gland
Project
217
AMP
2
community
Genome assembly (visualization)
hg19
729
GRCh38
4
hg18
Lab
150
AMP-T2D consortium
42
Kyle Gaulton, UCSD
19
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
37
inconsistent ontology term
2
audit script error
Audit category:
2
missing controlled_by
assembly!
hg19
month_released!
February, 2023
BIOSAMPLE
ASSAY
219 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
MeRIP-seq
STARR-seq
GRO-seq
Capture-C
single cell RNA-seq
Hi-C
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
56
9
1
2
1
1
1
EndoC_BH1
2
16
6
2
Panc1
7
GM12878
6
EndoC-BH1
1
1
+ See 11 more…
in vitro differentiated cells
embryonic stem cell
38
5
1
adipocyte
19
neural progenitor cell
9
pancreatic endoderm
5
1
cardiomyocytes (cardiac muscle cell)
1
2
+ See 9 more…
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